Browse by Academic Unit (A-Z)

Filippone, M. and Sanguinetti, G. (2010) Information theoretic novelty detection. Pattern Recognition, 43 (3). pp. 805-814. ISSN 0031-3203

Adra, S., Sun, T., MacNeil, S., Holcombe, M. and Smallwood, R. (2010) Development of a three dimensional multiscale computational model of the human epidermis. Plos One , 5 (1). Art. no.e8511 . ISSN 1932-6203

Sun, T., Adra, S., Smallwood, R., Holcombe, M. and MacNeil, S. (2009) Exploring hypotheses of the actions of TGF-beta 1 in epidermal wound healing using a 3D computational multiscale model of the human epidermis. Plos One, 4 (12). Art No.e8515. ISSN 1932-6203

Camastra, F. and Filippone, M. (2009) A comparative evaluation of nonlinear dynamics methods for time series prediction. Neural Computing and Applications, 18 (8). pp. 1021-1029. ISSN 0941-0643

Petrelli, D., Mazumdar, S., Dadzie, A-S. and Ciravegna, F. (2009) Multi Visualization and Dynamic Query for Effective Exploration of Semantic Data. In: Bernstein, A., Karger, D.R., Heath, T., Feigenbaum, L., Maynard, D., Motta, E. and Thirunarayan, K., (eds.) The Semantic Web - ISWC 2009. 8th International Semantic Web Conference, 25-29 October 2009, Washington, DC, USA. Lecture Notes in Computer Science (5823). Springer-Verlag , pp. 505-520. ISBN 978-3-642-04929-3

Dadzie, Aba-Sah, Bhagdev, R., Chakravarthy, A., Chapman, S., Iria, J., Lanfranchi, V., Magalhães, J., Petrelli, D. and Ciravegna, F. (2009) Applying semantic web technologies to knowledge sharing in aerospace engineering. Journal of Intelligent Manufacturing, 20 (5). pp. 611-623. ISSN 0956-5515 (Print) 1572-8145 (Online)

Dadzie, A.S., Bhagdev, R., Chakravarthy, A., Chapman, S., Iria, J., Lanfranchi, V., Magalhaes, J., Petrelli, D. and Ciravegna, F. (2009) Applying semantic web technologies to knowledge sharing in aerospace engineering. Journal of Intelligent Manufacturing, 20 (5). pp. 611-623. ISSN 0956-5515

Roberts, A., Gaizauskas, R., Hepple, M., Demetriou, G., Guo, Y. and Roberts, I. (2009) Building a semantically annotated corpus of clinical texts. Journal of Biomedical Informatics, 42 (5). pp. 950-966. ISSN 1532-0464

Krstajic, N., Matcher, S.J., Childs, D., Steenbergen, W., Hogg, R. and Smallwood, R. (2009) Evaluation of a cheap ultrasonic stage for light source coherence function measurement, optical coherence tomography and dynamic focusing. Measurement Science and Technology, 20 (10). Art No.107002. ISSN 0957-0233

Adra, S.F., Dodd, T.J., Griffin, I.A. and Fleming, P.J. (2009) Convergence acceleration operator for multiobjective optimization. IEEE Transactions on Evolutionary Computation, 13 (4). pp. 825-847. ISSN 1089-778X

Pearson, R., Liu, X., Sanguinetti, G., Milo, M., Lawrence, N. and Rattray, M. (2009) puma: a Bioconductor package for propagating uncertainty in microarray analysis. BMC Bioinformatics, 10 (1). p. 211. ISSN 1471-2105

Clayton, R.H. (2009) Influence of cardiac tissue anisotropy on re-entrant activation in computational models of ventricular fibrillation. Physica D-Nonlinear Phenomena, 238 (11-12). pp. 951-961. ISSN 0167-2789

Ramollari, Ervin, Kourtesis, Dimitrios, Dranidis, Dimitris and Simons, Anthony J.H. (2009) Leveraging Semantic Web Service Descriptions for Validation by Automated Functional Testing. In: The Semantic Web: Research and Applications. Lecture Notes in Computer Science, 5554/2009 . Springer , Berlin / Heidelberg, pp. 593-607. ISBN 978-3-642-02120-6

Brewster, C., Jupp, S., Luciano, J., Shotton, D., Stevens, R. and Zhang, Z. (2009) Issues in learning an ontology from text. BMC Bioinformatics, 10 (Suppl 5). S1. ISSN 1471-2105

Scarle, S. and Clayton, R.H. (2009) Early afterdepolarisations and ventricular arrhythmias in cardiac tissue: a computational study. Medical and Biological Engineering and Computing, 47 (3). pp. 291-300. ISSN 1741-0444

Rovetta, S., Masulli, F. and Filippone, M. (2009) Soft ranking in clustering. Neurocomputing, 72 (7-9). pp. 2028-2031. ISSN 0925-2312

Davidge, K.S., Sanguinetti, G., Yee, C.H., Cox, A.G., McLeod, C.W., Monk, C.E., Mann, B.E., Motterlini, R. and Poole, R.K. (2009) Carbon monoxide-releasing antibacterial molecules target respiration and global transcriptional regulators. Journal of Biological Chemistry, 284 (7). pp. 4516-4524. ISSN 0021-9258

Hofner, P., Struth, G. and Sutcliffe, G. (2009) Automated verification of refinement laws. Annals of Mathematics and Artificial Intelligence, 55 (1-2). pp. 35-62. ISSN 1012-2443

Filippone, M. (2009) Dealing with non-metric dissimilarities in fuzzy central clustering algorithms. International Journal of Accounting, 50 (2). pp. 363-384. ISSN 0020-7063

Stevenson, M., Guo, Y., Gaizauskas, R. and Martinez, D. (2008) Disambiguation of biomedical text using diverse sources of information. BMC Bioinformatics, 9 (Suppl 11). S7. ISSN 1471-2105

Walker, D.C., Georgopoulos, N.T. and Southgate, J. (2008) From pathway to population – a multiscale model of juxtacrine EGFR-MAPK signalling. BMC Systems Biology, 2 (1). p. 102. ISSN 1752-0509

Roberts, A., Gaizauskas, R., Hepple, M. and Guo, Y. (2008) Mining clinical relationships from patient narratives. BMC Bioinformatics, 9 (Suppl 11). S3. ISSN 1471-2105

Pogson, M., Holcombe, M., Smallwood, R. and Qwarnstrom, E. (2008) Introducing spatial information into predictive NF-kappa B modelling - an agent-based approach. Plos One , 3 (6). Art No.e2367 . ISSN 1932-6203

Bhagdev, R., Chapman, S., Ciravegna, F., Lanfranchi, V. and Petrelli, D. (2008) Hybrid Search: Effectively Combining Keywords and Semantic Searches. In: European Semantic Web Conference 2008. 5th European Semantic Web Conference, 1-5 June 2008, Tenerife (Spain). .

Gamito, M.N. and Maddock, S.C. (2008) Topological correction of hypertextured implicit surfaces for ray casting. The Visual Computer, 24 (6). pp. 397-409. ISSN 1432-2315

Sun, T., McMinn, P., Holcombe, M., Smallwood, R. and MacNeil, S. (2008) Agent based modelling helps in understanding the rules by which fibroblasts support keratinocyte colony formation. Plos One , 3 (5). Art No.e2129. ISSN 1932-6203

Winkler, J.R. and Allan, J.D. (2008) Structured total least norm and approximate GCDs of inexact polynomials. Journal of Computational and Applied Mathematics, 215 (1). pp. 1-13. ISSN 0377-0427

Wilks, Y. (2008) The Semantic Web: Apotheosis of annotation, but what are its semantics? IEEE Intelligent Systems, 23 (3). pp. 41-49. ISSN 1541-1672

Robinson, E.J.H., Holcombe, M. and Ratnieks, F.L.W. (2008) The organization of soil disposal by ants. Animal Behaviour, 75 (part 4). pp. 1389-1399. ISSN 0003-3472

Sanguinetti, G. (2008) Dimensionality reduction of clustered data sets. IEEE Transactions Pattern Analysis and Machine Intelligence, 30 (3). pp. 535-540. ISSN 0162-8828

Filippone, M., Camastra, F., Masulli, F. and Rovetta, S. (2008) A survey of kernel and spectral methods for clustering. Pattern Recognition, 41 (1). pp. 176-190. ISSN 0031-3203

Ma, N., Green, P., Barker, J. and Coy, A. (2007) Exploiting correlogram structure for robust speech recognition with multiple speech sources. Speech Communication, 49 (12). pp. 874-891. ISSN 0167-6393

Simons, A.J.H. (2007) JWalk: a tool for lazy, systematic testing of java classes by design introspection and user interaction. Automated Software Engineering, 14 (4). pp. 369-418. ISSN 1573-7535

Gamito, M.N. and Maddock, S.C. (2007) A progressive refinement approach for the visualisation of implicit surfaces. In: Advances in Computer Graphics and Computer Vision : International Conferences VISAPP and GRAPP 2006, Setúbal, Portugal, February 25-28, 2006, Revised Selected Papers. Communications in Computer and Information Science, 4 (Part 3). Springer , Berlin Heidelberg, pp. 93-108. ISBN 978-3-540-75274-5

Irons, D.J. and Monk, N.A.M. (2007) Identifying dynamical modules from genetic regulatory systems: applications to the segment polarity network. Bioinformatics, 8 (413). ISSN 1471-2105

Irons, D.J. and Monk, N.A.M. (2007) Identifying dynamical modules from genetic regulatory systems: applications to the segment polarity network. BMC Bioinformatics, 8 (1). p. 413. ISSN 1471-2105

Gamito, M.N. and Maddock, S.C. (2007) Progressive refinement rendering of implicit surfaces. Computers & Graphics, 31 (5). pp. 698-709. ISSN 0097-8493

Samsonova, A.A., Niranjan, M., Russell, S. and Brazma, A. (2007) Prediction of Gene Expression in Embryonic Structures of Drosophila melanogaster. PLoS Computational Biology, 3 (7). e144. ISSN 1553-734X

Gamito, M.N. and Maddock, S.C. (2007) Topological correction of hypertextured implicit surfaces for ray casting. In: IEEE International Conference on Shape Modeling and Applications. IEEE International Conference on Shape Modeling and Applications, 13 -15 June 2007, Lyon, France. IEEE , pp. 103-112. ISBN 0-7695-2815-5

Gamito, M.N. and Maddock, S.C. (2007) Ray casting implicit fractal surfaces with reduced affine arithmetic. The Visual Computer, 23 (3). pp. 155-165. ISSN 1432-2315

Hawley, M., Cunningham, S., Cardinaux, F., Coy, A., O'Neill, P., Seghal, S. and Enderby, P. (2007) Challenges in developing a voice input voice output communication aid for people with severe dysarthria. In: AAATE 2007 : 9th European Conference for the Advancement of Assistive Technology in Europe, Oct 2007, San Sebastian, Spain.

Huang, Liang, Thomson, Christopher and Holcombe, Mike (2007) How good are your testers? An assessment of testing ability. In: Testing: Academic and Industrial Conference Practice and Research Techniques - MUTATION, 2007. TAICPART-MUTATION 2007, 12-14 September 2007, Windsor, UK.

Gandhi, S.V., Walker, D.C., Brown, B.H. and Anumba, D.O.C. (2006) Comparison of human uterine cervical electrical impedance measurements derived using two tetrapolar probes of different sizes. BioMedical Engineering OnLine, 5 (62). ISSN 1475-925X

Petrelli, D., Lanfranchi, V., Moore, P., Ciravegna, F. and Cadnas, C. (2006) Oh My, Where Is the End of the Context? Dealing with Information in a Highly Complex Environment. In: Proceedings of the 1st International Conference on Information Interaction in Context. 1st International Conference on Information Interaction in Context, October 18 - 20, 2006, Cophenhagen, Denmark. ACM , Copenhagen, pp. 37-41. ISBN 1-59593-482-0

Gamito, M.N. and Maddock, S.C. (2006) Anti-aliasing with stratified B-spline filters of arbitrary degree. Computer Graphics Forum, 25 (2). pp. 163-172. ISSN 1467-8659

Crampin, E.J., Smith, N.P., Langham, A.E., Clayton, R.H. and Orchard, C.H. (2006) Acidosis in models of cardiac ventricular myocytes. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 364 (1842). pp. 1171-1186. ISSN 1471-2962

Benson, A.P., Clayton, R.H., Holden, A.V., Kharche, S. and Tong, W.C. (2006) Endogenous driving and synchronization in cardiac and uterine virtual tissues: bifurcations and local coupling. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 364 (1842). pp. 1313-1327. ISSN 1471-2962

Thomson, C. and Holcombe, M. (2005) Using a formal method to model software design in XP projects. Annals of Mathematics, Computing and Teleinformatics, 1 (3). pp. 44-53. ISSN 1109-9305

Clayton, R.H. and Taggart, P. (2005) Regional differences in APD restitution can initiate wavebreak and re-entry in cardiac tissue: A computational study. BioMedical Engineering OnLine, 4 (54). ISSN 1475-925X

Young, R.J., Stevenson, R.M., Shields, A.J., Atkinson, P., Cooper, K., Ritchie, D.A., Groom, K.M., Tartakovskii, A.I. and Skolnick, M.S. (2005) Inversion of exciton level splitting in quantum dots. Physical Review B: Condensed Matter and Materials Physics, 72 (11). p. 113305. ISSN 1098-0121

Petrelli, D., Lanfranchi, V. and Ciravegna, F. (2005) Working out a common task: design and evaluation of user-intelligent system collaboration. In: Costabile, M.F. and Paternò, F., (eds.) Human-Computer Interaction - INTERACT 2005. Interact 2005: IFIP TC13 International Conference, 12 - 16 September 2005, Rome, Italy. Lecture Notes in Computer Science (3585/2005). Springer , Berlin / Heidelberg, pp. 309-322. ISBN 978-3-540-28943-2

Lanfranchi, V., Ciravegna, F. and Petrelli, D. (2005) Semantic web-based document: editing and browsing in AktiveDoc. In: Gómez-Pérez, A. and Euzenat, J., (eds.) The Semantic Web: Research and Applications. Second European Semantic Web Conference, ESWC 2005, 29 May - June 1st 2005, Heraklion, Crete (Greece). Lecture Notes in Computer Science (3532/2005). Springer , Berlin / Heidelberg, pp. 623-632. ISBN 978-3-540-26124-7

Wan, V. and Renals, S. (2005) Speaker verification using sequence discriminant support vector machines. IEEE Transactions on Speech and Audio Processing, 13 (2). pp. 203-210. ISSN 1063-6676

Clayton, R.H. and Holden, A.V. (2005) Dispersion of cardiac action potential duration and the initiation of re-entry: A computational study. Biomedical Engineering Online, 4 (11). ISSN 1475-925X

Wrigley, S.N., Brown, G.J., Wan, V. and Renals, S. (2005) Speech and crosstalk detection in multichannel audio. IEEE Transactions on Speech and Audio Processing, 13 (1). pp. 84-91. ISSN 1063-6676

Thomson, C. (2005) Professionalism In The First Year Of A Software Engineering Curriculum. Technical Report. University of Sheffield: SOLAR.

Kalra, Bhavnidhi, Thomson, Chris and Holcombe, Mike (2005) The software hut - a student experience of eXtreme programming with real commercial clients. In: Extreme Programming and Agile Processes in Software Engineering. 6th International Conference, XP 2005, Sheffield, UK, June 18-23, 2005. Proceedings. Lecture Notes in Computer Science, 3556 . Springer , Berlin / Heidelberg, pp. 323-324. ISBN 978-3-540-26277-0

Walker, D.C., Hill, G., Wood, S.M., Smallwood, R.H. and Southgate, J. (2004) Agent-based computational modeling of wounded epithelial cell monolayers. IEEE Transactions on Nanobioscience, 3 (3). pp. 153-163. ISSN 1536-1241

Smallwood, R.H. [r.smallwood@shef.ac.uk], Holcombe, W.M.L. and Walker, D.C. (2004) Development and validation of computational models of cellular interaction. Journal of Molecular Histology, 35 (7). pp. 659-665. ISSN 1567-2379

Walker, D.C., Southgate, J., Hill, G., Holcombe, M., Hose, D.R., Wood, S.M., Mac Neil, S. and Smallwood, R.H. [r.smallwood@shef.ac.uk] (2004) The Epitheliome: agent-based modelling of the social behaviour of cells. BioSystems, 76 (1-3). pp. 89-100. ISSN 0303-2647

Clayton, R.H and Holden, A.V (2004) Filament behavior in a computational model of ventricular fibrillation in the canine heart. IEEE Transactions on Biomedical Engineering Bme, 51 (1). pp. 28-34. ISSN 0018-9294

Demetriou, G., Skadina, I., Keskustalo, H., Karlgren, J., Deksne, D., Petrelli, D., Hansen, P., Gaizauskas, R. and Sanderson, M. (2004) Cross-lingual document retrieval categorisation and navigation based on distributed services. In: Proceedings of the First Baltic Conference. Human Language Technologies – the Baltic Perspective, April 21 and 22, 2004, Rīga, Latvia. .

Thomson, C. (2004) The Sourcerer's Apprentice. Technical Report. University of Sheffield, SOLAR.

Thomson, C. and Holcombe, W. (2003) Applying XP Ideas Formally: The Story Card and Extreme X-Machines. In: 1st South-East European Workshop on Formal Methods. Agile Formal Methods: Practical, Rigorous Methods for a changing world, 21-23 November 2003, Thessaloniki, Greece.

Pastra, K., Saggion, H. and Wilks, Y. (2003) Intelligent indexing of crime scene photographs. IEEE Intelligent Systems, 18 (1). pp. 55-61. ISSN 1541-1672

Saggion, H. and Lapalme, G. (2002) Generating indicative-informative summaries with SumUM. Computational Linguistics, 28 (4). pp. 497-526. ISSN 0891-2017

Smallwood, R.H. [r.smallwood@shef.ac.uk], Metherall, P., Hose, D., Delves, M., Pollock, H., Hammiche, A., Hodges, C., Mathot, V. and Willcocks, P. (2002) Tomographic imaging and scanning thermal microscopy: thermal impedance tomography. Thermochimica Acta, 385 (1-2). pp. 19-32. ISSN 0040-6031

Petrelli, D., Beaulieu, M., Demetriou, G., Herring, P. and Sanderson, M. (2002) Is query translation a distinct task from search? In: Peters, C., (ed.) Working Notes for the CLEF 2002 Workshop. CLEF, September 19-20, 2002, Rome, Italy. , pp. 293-299.

Stevenson, M. and Wilks, Y. (2001) The interaction of knowledge sources in word sense disambiguation. Computational Linguistics, 27 (3). pp. 321-349. ISSN 0891-2017

Krotov, A., Hepple, M., Gaizauskas, R. and Wilks, Y. (1999) Evaluating two methods for Treebank grammar compaction. Natural Language Engineering, 5 (4). pp. 377-394. ISSN 1351-3249

Gotoh, Y. and Renals, S. (1999) Topic-based mixture language modelling. Natural Language Engineering, 5 (4). pp. 355-375. ISSN 1351-3249

Humphreys, K., Gaizauskas, R., Hepple, M. and Sanderson, M. (1999) University of Sheffield TREC-8 Q & A System. In: NIST Special Publication 500-246. The Eighth Text REtrieval Conference (TREC 8), November 17-19, 1999, Gaithersburg, Maryland.. NIST , pp. 707-716.

Gotoh, Y., Hochberg, M.M. and Silverman, H.F. (1998) Efficient training algorithms for HMMs using incremental estimation. IEEE Transactions on Speech and Audio Processing, 6 (6). pp. 539-548. ISSN 1063-6676

Sharkey, A.J.C. and Sharkey, N.E. (1997) Combining diverse neural nets. The Knowledge Engineering Review, 12 (3). pp. 231-247. ISSN 0269-8889

Metherall, P., Barber, D.C., Smallwood, R.H. [r.smallwood@shef.ac.uk] and Brown, B.H. (1996) Three Dimensional Electrical Impedance Tomography. Nature, 380 (6574). pp. 509-512. ISSN 0028-0836