Forsyth, J.E. orcid.org/0000-0002-5839-9160, Al-Anbaki, A.H., Plusa, B. et al. (1 more author) (2023) Unlabelled landmark matching via Bayesian data selection, and application to cell matching across imaging modalities. Statistics and Computing, 33 (5). 100. ISSN 0960-3174
Abstract
We consider the problem of landmark matching between two unlabelled point sets, in particular where the number of points in each cloud may differ, and where points in each cloud may not have a corresponding match. We invoke a Bayesian framework to identify the transformation of coordinates that maps one cloud to the other, alongside correspondence of the points. This problem necessitates a novel methodology for Bayesian data selection, simultaneous inference of model parameters, and selection of the data which leads to the best fit of the model to the majority of the data. We apply this to a problem in developmental biology where the landmarks correspond to segmented cell centres, where potential death or division of cells can lead to discrepancies between the point-sets from each image. We validate the efficacy of our approach using in silico tests and a microinjected fluorescent marker experiment. Subsequently we apply our approach to the matching of cells between real time imaging and immunostaining experiments, facilitating the combination of single-cell data between imaging modalities. Furthermore our approach to Bayesian data selection is broadly applicable across data science, and has the potential to change the way we think about fitting models to data.
Metadata
Item Type: | Article |
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Authors/Creators: |
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Copyright, Publisher and Additional Information: | © The Author(s) 2023. This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecomm ons.org/licenses/by/4.0/. |
Keywords: | Bayesian data selection; Landmark matching; Multi-modal image analysis |
Dates: |
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Institution: | The University of Sheffield |
Academic Units: | The University of Sheffield > Faculty of Medicine, Dentistry and Health (Sheffield) > School of Medicine and Population Health |
Depositing User: | Symplectic Sheffield |
Date Deposited: | 08 Aug 2024 11:28 |
Last Modified: | 08 Aug 2024 11:28 |
Status: | Published |
Publisher: | Springer Science and Business Media LLC |
Refereed: | Yes |
Identification Number: | 10.1007/s11222-023-10259-7 |
Related URLs: | |
Open Archives Initiative ID (OAI ID): | oai:eprints.whiterose.ac.uk:215774 |