Kim, J orcid.org/0000-0002-3456-6614, Heslop-Harrison, P, Postlethwaite, I et al. (1 more author) (2007) Stochastic Noise and Synchronisation during Dictyostelium Aggregation Make cAMP Oscillations Robust. PLoS Computational Biology, 3 (11). e218. pp. 2190-2198. ISSN 1553-734X
Abstract
Stable and robust oscillations in the concentration of adenosine 3′, 5′-cyclic monophosphate (cAMP) are observed during the aggregation phase of starvation-induced development in Dictyostelium discoideum. In this paper we use mathematical modelling together with ideas from robust control theory to identify two factors which appear to make crucial contributions to ensuring the robustness of these oscillations. Firstly, we show that stochastic fluctuations in the molecular interactions play an important role in preserving stable oscillations in the face of variations in the kinetics of the intracellular network. Secondly, we show that synchronisation of the aggregating cells through the diffusion of extracellular cAMP is a key factor in ensuring robustness of the oscillatory waves of cAMP observed in Dictyostelium cell cultures to cell-to-cell variations. A striking and quite general implication of the results is that the robustness analysis of models of oscillating biomolecular networks (circadian clocks, Ca²⁺ oscillations, etc.) can only be done reliably by using stochastic simulations, even in the case where molecular concentrations are very high.
Metadata
Item Type: | Article |
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Authors/Creators: |
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Copyright, Publisher and Additional Information: | (c) 2007 Kim et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
Keywords: | Circadian oscillators; Dictyostelium; Simulation and modeling; Genetic oscillators; Dictyostelium discoideum; Protein kinases; Circadian rhythms; Differential equations |
Dates: |
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Institution: | The University of Leeds |
Academic Units: | The University of Leeds > Faculty of Engineering & Physical Sciences (Leeds) > School of Mechanical Engineering (Leeds) > Institute of Engineering Systems and Design (iESD) (Leeds) |
Depositing User: | Symplectic Publications |
Date Deposited: | 05 Sep 2019 09:15 |
Last Modified: | 23 Jun 2023 22:40 |
Status: | Published |
Publisher: | Public Library of Science |
Identification Number: | 10.1371/journal.pcbi.0030218 |
Related URLs: | |
Open Archives Initiative ID (OAI ID): | oai:eprints.whiterose.ac.uk:124347 |