Items where authors include "Noy, Agnes"

Article

Burman, Matthew and Noy, Agnes orcid.org/0000-0003-0673-8949 (2025) Atomic Description of the Reciprocal Action between Supercoils and Melting Bubbles on Linear DNA. Physical Review Letters. 038403. ISSN 1079-7114

Gardasevic, Tania and Noy, Agnes orcid.org/0000-0003-0673-8949 (2024) The impact of sequence periodicity on DNA mechanics: investigating the origin of A-tract's curvature. Nanoscale. 18410-18420. ISSN 2040-3372

Shepherd, Jack, Guilbaud, Sébastien, Zhou, Zhaokun et al. (7 more authors) (2024) Correlating fluorescence microscopy, optical and magnetic tweezers to study single chiral biopolymers such as DNA. Nature Communications. 2748. ISSN 2041-1723

Fosado, Yair A G, Jamieson, Howard, Weir, Simon et al. (3 more authors) (2023) Fluidification of entanglements by a DNA bending protein. Physical Review Letters. 058203. ISSN 1079-7114

Watson, George Daniel orcid.org/0000-0002-6524-0828, Chan, Elliot, Leake, Mark Christian orcid.org/0000-0002-1715-1249 et al. (1 more author) (2022) Structural interplay between DNA-shape protein recognition and supercoiling:the case of IHF. Computational and Structural Biotechnology Journal. pp. 5264-5274. ISSN 2001-0370

Kristoffersen, Emil Laust, Burman, Matthew, Noy, Agnes orcid.org/0000-0003-0673-8949 et al. (1 more author) (2022) Rolling circle RNA synthesis catalysed by RNA. eLife. e75186. ISSN 2050-084X

da Rosa, Gabriela, Grille, Leandro, Calzada, Victoria et al. (23 more authors) (2021) Sequence-dependent structural properties of B-DNA:what have we learned in 40 years? Biophysical Reviews. pp. 995-1005. ISSN 1867-2450

Yoshua, Samuel B, Watson, George Daniel orcid.org/0000-0002-6524-0828, Howard, Jamieson Anthony Leyland orcid.org/0000-0002-4694-5427 et al. (3 more authors) (2021) Integration host factor bends and bridges DNA in a multiplicity of binding modes with varying specificity. Nucleic Acids Research. 8684–8698. ISSN 0305-1048

Backer, Adam S, King, Graeme A, Biebricher, Andreas S et al. (6 more authors) (2021) Elucidating the Role of Topological Constraint on the Structure of Overstretched DNA using Fluorescence Polarization Microscopy. The Journal of Physical Chemistry. pp. 8351-8361.

Pyne, Alice L B, Noy, Agnes orcid.org/0000-0003-0673-8949, Main, Kavit H S et al. (10 more authors) (2021) Base-pair resolution analysis of the effect of supercoiling on DNA flexibility and major groove recognition by triplex-forming oligonucleotides. Nature Communications. 1053. ISSN 2041-1723

Velasco Berrelleza, Victor, Burman, Matthew, Shepherd, Jack et al. (3 more authors) (2020) SerraNA:a program to determine nucleic acids elasticity from simulation data. Physical Chemistry Chemical Physics. pp. 19254-19266. ISSN 1463-9084

Jalal, Adam, Tran, Ngat, Stevenson, Clare et al. (6 more authors) (2020) Diversification of DNA-Binding Specificity by Permissive and Specificity-Switching Mutations in the ParB/Noc Protein Family. Cell reports. 107928. ISSN 2211-1247

Shepherd, Jack, Greenall, Robert James orcid.org/0000-0002-0922-1243, Probert, Matt orcid.org/0000-0002-1130-9316 et al. (2 more authors) (2020) The emergence of sequence-dependent structural motifs in stretched, torsionally 2 constrained DNA. Nucleic Acids Research. gkz1227. 1748–1763. ISSN 0305-1048

Noy, Agnes orcid.org/0000-0003-0673-8949, Maxwell, Anthony and Harris, Sarah A. (2017) Interference between Triplex and Protein Binding to Distal Sites on Supercoiled DNA. Biophysical Journal. pp. 523-531. ISSN 0006-3495

Sutthibutpong, Thana, Matek, Christian, Benham, Craig J. et al. (6 more authors) (2016) Long-range correlations in the mechanics of small DNA circles under topological stress revealed by multi-scale simulation. Nucleic Acids Research. pp. 9121-9130. ISSN 0305-1048

Noy, Agnes orcid.org/0000-0003-0673-8949, Sutthibutpong, Thana and Harris, Sarah A. (2016) Protein/DNA interactions in complex DNA topologies: expect the unexpected. Biophysical Reviews. ISSN 1867-2450

Book Section

Sutthibutpong, Thana, Noy, Agnes orcid.org/0000-0003-0673-8949 and Harris, Sarah A. (2016) Atomistic Molecular Dynamics Simulations of DNA Minicircle Topoisomers: A Practical Guide to Setup, Performance and Analysis. In: Chromosome Architecture. Methods in Molecular Biology . Springer , pp. 195-219.