Smit, Samuel J orcid.org/0000-0002-7382-5113, Whitehead, Caragh, James, Sally R et al. (5 more authors) (2024) Pseudomolecule-scale genome assemblies of Drepanocaryum sewerzowii and Marmoritis complanata. G3: Genes, Genomes, Genetics. jkae172. ISSN 2160-1836
Abstract
The Nepetoideae, a subfamily of Lamiaceae (mint family), is rich in aromatic plants, many of which are sought after for their use as flavors and fragrances or for their medicinal properties. Here, we present genome assemblies for two species in Nepetiodeae: Drepanocaruym sewerzowii and Marmoritis complanata. Both assemblies were generated using Oxford Nanopore Q20 + reads with contigs anchored to nine pseudomolecules that resulted in 335 Mb and 305 Mb assemblies, respectively, and BUSCO scores above 95% for both the assembly and annotation. We furthermore provide a species tree for the Lamiaceae using only genome-derived gene models, complementing existing transcriptome and marker-based phylogenies.
Metadata
Item Type: | Article |
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Authors/Creators: |
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Copyright, Publisher and Additional Information: | © The Author(s) 2024. Published by Oxford University Press on behalf of The Genetics Society of America |
Keywords: | Genome, Plant,Molecular Sequence Annotation,Phylogeny,Genomics/methods,Lamiaceae/genetics |
Dates: |
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Institution: | The University of York |
Academic Units: | The University of York > Faculty of Sciences (York) > Biology (York) > Centre for Novel Agricultural Products (CNAP) (York) The University of York > Faculty of Sciences (York) > Biology (York) |
Depositing User: | Pure (York) |
Date Deposited: | 17 Oct 2024 08:56 |
Last Modified: | 23 Jan 2025 00:36 |
Published Version: | https://doi.org/10.1093/g3journal/jkae172 |
Status: | Published |
Refereed: | Yes |
Identification Number: | 10.1093/g3journal/jkae172 |
Open Archives Initiative ID (OAI ID): | oai:eprints.whiterose.ac.uk:218529 |