Items where authors include "Westhead, DR"

Article

Brownlie, RJ, Kennedy, R, Wilson, EB et al. (18 more authors) (2023) Cytokine receptor IL27RA is an NF-kB-responsive gene involved in CD38 upregulation in multiple myeloma. Blood Advances, 7 (15). pp. 3874-3890. ISSN 2473-9529

Davies, AJ, Barrans, S, Stanton, L et al. (20 more authors) (2023) Differential Efficacy From the Addition of Bortezomib to R-CHOP in Diffuse Large B-Cell Lymphoma According to the Molecular Subgroup in the REMoDL-B Study With a 5-Year Follow-Up. Journal of Clinical Oncology, 41 (15). pp. 2718-2723. ISSN 0732-183X

Bewicke-Copley, F, Korfi, K, Araf, S et al. (33 more authors) (2023) Longitudinal expression profiling identifies a poor risk subset of patients with ABC-type diffuse large B-cell lymphoma. Blood Advances, 7 (5). pp. 845-855. ISSN 2473-9529

Miles, J, Townend, S, Milonaitytė, D et al. (4 more authors) (2023) Transcellular chaperone signaling is an intercellular stress-response distinct from the HSF-1–mediated heat shock response. PLOS Biology, 21 (2). e3001605. ISSN 1544-9173

Tanner, G orcid.org/0000-0001-9706-3590, Westhead, DR orcid.org/0000-0002-0519-3820, Droop, A et al. (1 more author) (2021) Benchmarking pipelines for subclonal deconvolution of bulk tumour sequencing data. Nature Communications, 12 (1). 6396. ISSN 2041-1723

Zogopoulos, VL, Saxami, G, Malatras, A et al. (7 more authors) (2021) Arabidopsis Coexpression Tool: a tool for gene coexpression analysis in Arabidopsis thaliana. iScience, 24 (8). 102848. ISSN 2589-0042

Ahmed, S orcid.org/0000-0003-4912-746X, Glover, P, Taylor, J et al. (8 more authors) (2021) Comparative analysis of gene expression platforms for cell‐of‐origin classification of diffuse large B‐cell lymphoma shows high concordance. British Journal of Haematology, 192 (3). bjh.17246. pp. 599-604. ISSN 0007-1048

Cucco, F, Barrans, S, Sha, C et al. (21 more authors) (2020) Distinct genetic changes reveal evolutionary history and heterogeneous molecular grade of DLBCL with MYC/BCL2 double-hit. Leukemia, 34. pp. 1329-1341. ISSN 0887-6924

Vijayabaskar, MS, Goode, DK, Obier, N et al. (12 more authors) (2019) Identification of gene specific cis-regulatory elements during differentiation of mouse embryonic stem cells: An integrative approach using high-throughput datasets. PLoS Computational Biology, 15 (11). ARTN: e100. ISSN 1553-734X

Tanner, G, Westhead, DR orcid.org/0000-0002-0519-3820, Droop, A orcid.org/0000-0001-7695-7480 et al. (1 more author) (2019) Simulation of heterogeneous tumour genomes with HeteroGenesis and in silico whole exome sequencing. Bioinformatics, 35 (16). pp. 2850-2852. ISSN 1367-4803

Holmes, KB, Sadreev, II, Rawstron, AC orcid.org/0000-0003-0798-9790 et al. (4 more authors) (2019) Ibrutinib induces chromatin reorganisation of chronic lymphocytic leukaemia cells. Oncogenesis, 8. 32. ISSN 2157-9024

Kirkham, CM, Scott, JNF, Wang, X et al. (7 more authors) (2019) Cut-and-Run: A Distinct Mechanism by which V(D)J Recombination Causes Genome Instability. Molecular Cell, 74 (3). 584-597.e9. ISSN 1097-2765

Davies, A, Cummin, TE, Barrans, S et al. (21 more authors) (2019) Gene-expression profiling of bortezomib added to standard chemoimmunotherapy for diffuse large B-cell lymphoma (REMoDL-B): an open-label, randomised, phase 3 trial. The Lancet Oncology, 20 (5). pp. 649-662. ISSN 1470-2045

Care, MA orcid.org/0000-0001-6584-5889, Westhead, DR orcid.org/0000-0002-0519-3820 and Tooze, RM orcid.org/0000-0003-2915-7119 (2019) Parsimonious Gene Correlation Network Analysis (PGCNA): a tool to define modular gene co-expression for refined molecular stratification in cancer. npj Systems Biology and Applications, 5. 13. ISSN 2056-7189

Humes, JR orcid.org/0000-0002-1407-7880, Schiffrin, B, Calabrese, AN et al. (4 more authors) (2019) The Role of SurA PPIase Domains in Preventing Aggregation of the Outer Membrane Proteins tOmpA and OmpT. Journal of Molecular Biology, 431 (6). pp. 1267-1283. ISSN 0022-2836

Stephenson, S, Care, MA orcid.org/0000-0001-6584-5889, Fan, I et al. (4 more authors) (2019) Growth factor-like gene regulation is separable from survival and maturation in antibody secreting cells. Journal of Immunology, 202 (4). pp. 1287-1300. ISSN 0022-1767

Sha, C, Barrans, S, Cucco, F et al. (20 more authors) (2019) Molecular high-grade B cell lymphoma: defining a poor risk group requiring different approaches to therapy. Journal of Clinical Oncology, 37 (3). pp. 202-213. ISSN 0732-183X

Toenhake, CG, Fraschka, SA-K, Vijayabaskar, MS et al. (3 more authors) (2018) Chromatin Accessibility-Based Characterization of the Gene Regulatory Network Underlying Plasmodium falciparum Blood-Stage Development. Cell Host & Microbe, 23 (4). pp. 557-569. ISSN 1931-3128

Zainul Abidin, FN and Westhead, DR orcid.org/0000-0002-0519-3820 (2017) Flexible model-based clustering of mixed binary and continuous data: application to genetic regulation and cancer. Nucleic Acids Research, 45 (7). ISSN 0305-1048

Shar, NA, Vijayabaskar, MS and Westhead, DR orcid.org/0000-0002-0519-3820 (2016) Cancer somatic mutations cluster in a subset of regulatory sites predicted from the ENCODE data. Molecular Cancer, 15. 76. ISSN 1476-4598

Hayes, J, Thygesen, H, Gregory, W et al. (5 more authors) (2016) A validated microRNA profile with predictive potential in glioblastoma patients treated with bevacizumab. Molecular Oncology, 10 (8). pp. 1296-1304. ISSN 1574-7891

Care, MA, Stephenson, SJ, Barnes, NA et al. (7 more authors) (2016) Network analysis identifies proinflammatory plasma cell polarization for secretion of ISG15 in human autoimmunity. Journal of Immunology, 197 (4). pp. 1447-1459. ISSN 0022-1767

Goode, DK, Obier, N, Vijayabaskar, MS et al. (18 more authors) (2016) Dynamic Gene Regulatory Networks Drive Hematopoietic Specification and Differentiation. Developmental Cell, 36 (5). pp. 572-587. ISSN 1534-5807

Care, MA, Westhead, DR and Tooze, RM (2015) Gene expression meta-analysis reveals immune response convergence on the IFNγ-STAT1-IRF1 axis and adaptive immune resistance mechanisms in lymphoma. Genome Medicine, 7. 96. ISSN 1756-994X

Cauchy, P, James, SR, Zacarias-Cabeza, J et al. (16 more authors) (2015) Chronic FLT3-ITD Signaling in Acute Myeloid Leukemia Is Connected to a Specific Chromatin Signature. Cell Reports, 12 (5). 821 - 836. ISSN 2211-1247

Sha, C, Barrans, S, Care, MA et al. (4 more authors) (2015) Transferring genomics to the clinic: distinguishing Burkitt and diffuse large B cell lymphomas. Genome Medicine: medicine in the post-genomic era, 7. 64. ISSN 1756-994X

Stead, LF, Thygesen, H, Westhead, DR et al. (1 more author) (2015) Using common variants to indicate cancer genes. International Journal of Cancer, 136 (1). 241 - 245. ISSN 0020-7136

Ptasinska, A, Assi, SA, Martinez-Soria, N et al. (14 more authors) (2014) Identification of a dynamic core transcriptional network in t(8;21) AML that regulates differentiation block and self-renewal. Cell Reports, 8 (6). 1974 - 1988. ISSN 2211-1247

Care, MA, Cocco, M, Laye, JP et al. (9 more authors) (2014) SPIB and BATF provide alternate determinants of IRF4 occupancy in diffuse large B-cell lymphoma linked to disease heterogeneity. Nucleic Acids Research, 42 (12). 7591 - 7610. ISSN 0305-1048

Gilmour, J, Assi, SA, Jaegle, U et al. (6 more authors) (2014) A crucial role for the ubiquitously expressed transcription factor Sp1 at early stages of hematopoietic specification. Development, 141 (12). 2391 - 2401. ISSN 0950-1991

Johnson, R, Gamblin, RJ, Ooi, L et al. (6 more authors) (2006) Identification of the REST regulon reveals extensive transposable element-mediated binding site duplication. Nucleic Acids Research, 34 (14). pp. 3862-3877. ISSN 0305-1048

Sharma-Oates, A, Quirke, P orcid.org/0000-0002-3597-5444 and Westhead, DR orcid.org/0000-0002-0519-3820 (2005) TmaDB: a repository for tissue microarray data. BMC Bioinformatics, 6 (218). pp.218-pp.218. ISSN 1471-2105