Items where authors include "Chaudhuri, R.R."

Article

Buddle, J.E., Thompson, L.M., Williams, A.S. et al. (6 more authors) (2024) Identification of pathways to high-level vancomycin resistance in Clostridioides difficile that incur high fitness costs in key pathogenicity traits. PLOS Biology, 22 (8). e3002741. ISSN 1545-7885

Hall, J.N., Bah, S.Y. orcid.org/0000-0002-0309-6509, Khalid, H. orcid.org/0000-0001-6134-2184 et al. (10 more authors) (2024) Molecular characterization of Streptococcus pyogenes (StrepA) non-invasive isolates during the 2022–2023 UK upsurge. Microbial Genomics, 10 (8). 001277. ISSN 2057-5858

Hassan, M.U. orcid.org/0000-0002-5524-9765, Chaudhuri, R.R. and Williamson, M.P. orcid.org/0000-0001-5572-1903 (2023) DUF916 and DUF3324 in the WxL protein cluster bind to WxL and link bacterial and host surfaces. Protein Science, 32 (11). e4806. ISSN 0961-8368

Ormsby, M.J., Vaz, F., Kirk, J.A. et al. (8 more authors) (2023) An intact S-layer is advantageous to Clostridioides difficile within the host. PLOS Pathogens, 19 (6). e1011015. ISSN 1553-7374

Nlebedim, V.U., Chaudhuri, R.R. and Walters, K. orcid.org/0000-0002-5718-5734 (2021) Probabilistic identification of bacterial essential genes via insertion density using TraDIS data with Tn5 libraries. Bioinformatics, 37 (23). pp. 4343-4349. ISSN 1367-4803

Court, E.K., Chaudhuri, R.R. orcid.org/0000-0001-5037-2695, Kapoore, R.V. et al. (4 more authors) (2021) Looking through the FOG: microbiome characterization and lipolytic bacteria isolation from a fatberg site. Microbiology, 167 (12). 001117. ISSN 1350-0872

Bossé, J.T., Li, Y., Leanse, L.G. et al. (27 more authors) (2021) Rationally designed mariner vectors for functional genomic analysis of Actinobacillus pleuropneumoniae and other Pasteurellaceae species by transposon-directed insertion-site sequencing (TraDIS). Animal Diseases, 1 (1). 29.

Gilroy, R., Ravi, A., Getino, M. et al. (17 more authors) (2021) Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture. PeerJ, 9. e10941. ISSN 2167-8359

Janganan, T.K., Mullin, N., Dafis-Sagarmendi, A. et al. (8 more authors) (2020) Architecture and self-assembly of clostridium sporogenes and clostridium botulinum spore surfaces illustrate a general protective strategy across spore formers. mSphere, 5 (4). e00424-20.

Canals, R., Chaudhuri, R.R. orcid.org/0000-0001-5037-2695, Steiner, R.E. et al. (6 more authors) (2019) The fitness landscape of the African salmonella typhimurium ST313 strain D23580 reveals unique properties of the pBT1 plasmid. PLOS Pathogens, 15 (9).

Gray, K., Green, L.R. orcid.org/0000-0002-2836-2041, Chaudhuri, R.R. orcid.org/0000-0001-5037-2695 et al. (1 more author) (2019) Draft whole-genome sequences of 10 Aeromonas strains from clinical and environmental sources. Microbiology Resource Announcements, 8 (30). e00170-19. ISSN 2576-098X

Canals, R., Hammarlöf, D.L., Kröger, C. orcid.org/0000-0003-0461-1530 et al. (16 more authors) (2019) Adding function to the genome of African Salmonella Typhimurium ST313 strain D23580. PLoS Biology, 17 (1). e3000059. ISSN 1544-9173

Vohra, P. orcid.org/0000-0002-1948-7387, Chaudhuri, R.R. orcid.org/0000-0001-5037-2695, Mayho, M. et al. (6 more authors) (2019) Retrospective application of transposon-directed insertion-site sequencing to investigate niche-specific virulence of Salmonella Typhimurium in cattle. BMC Genomics, 20. 20. ISSN 1471-2164

Howell, K.J., Weinert, L.A., Peters, S.E. et al. (13 more authors) (2017) "Pathotyping" Multiplex PCR Assay for Haemophilus parasuis: a Tool for Prediction of Virulence. Journal of Clinical Microbiology, 55 (9). pp. 2617-2628. ISSN 0095-1137

Oshota, O., Conway, M., Fookes, M. et al. (11 more authors) (2017) Transcriptome and proteome analysis of Salmonella enterica serovar Typhimurium systemic infection of wild type and immune-deficient mice. PLoS ONE, 12 (8). e0181365. ISSN 1932-6203

Dunne, K.A., Chaudhuri, R.R. orcid.org/0000-0001-5037-2695, Rossiter, A.E. et al. (7 more authors) (2017) Sequencing a piece of history: complete genome sequence of the original Escherichia coli strain. Microbial Genomics, 3. ISSN 2057-5858

Bossé, J.T., Li, Y., Rogers, J. et al. (9 more authors) (2017) Whole Genome Sequencing for Surveillance of Antimicrobial Resistance in Actinobacillus pleuropneumoniae. Frontiers in Microbiology, 8. 311.

Stafford, G.P., Chaudhuri, R.R., Haraszthy, V. et al. (5 more authors) (2016) Draft Genome Sequences of Three Clinical Isolates of Tannerella forsythia Isolated from Subgingival Plaque from Periodontitis Patients in the United States. Genome Announcements, 4 (6). e01286-16. ISSN 2169-8287

Wielgoss, S., Didelot, X., Chaudhuri, R.R. orcid.org/0000-0001-5037-2695 et al. (4 more authors) (2016) A barrier to homologous recombination between sympatric strains of the cooperative soil bacterium Myxococcus xanthus. ISME Journal, 10 (10). pp. 2468-2477. ISSN 1751-7362

Li, Y., Bossé, J.T., Williamson, S.M. et al. (14 more authors) (2016) Actinobacillus pleuropneumoniae serovar 8 predominatesin England and Wales. Veterinary Record, 179 (11). 276. ISSN 0042-4900

Bossé, J.T., Li, Y., Crespo, R.F. et al. (16 more authors) (2016) ICEApl1, an integrative conjugative element related to ICEHin1056, identified in the pig pathogen Actinobacillus pleuropneumoniae. Frontiers in Microbiology, 7:810.

Chen, G.E., Hitchcock, A., Jackson, P.J. orcid.org/0000-0001-9671-2472 et al. (4 more authors) (2016) Two Unrelated 8-Vinyl Reductases Ensure Production of Mature Chlorophylls in Acaryochloris marina. JOURNAL OF BACTERIOLOGY, 198 (9). pp. 1393-1400. ISSN 0021-9193

Bossé, J.T., Chaudhuri, R.R. orcid.org/0000-0001-5037-2695, Li, Y. et al. (10 more authors) (2016) Complete Genome Sequence of MIDG2331, a Genetically Tractable Serovar 8 Clinical Isolate of Actinobacillus pleuropneumoniae. Genome Announcements, 4 (1). e01667-15.

Baig, A., Weinert, L.A., Peters, S.E. et al. (11 more authors) (2015) Whole genome investigation of a divergent clade of the pathogen Streptococcus suis. Frontiers in Microbiology , 6. 1191. ISSN 1664-302X

Weinert, L.A., Chaudhuri, R.R. orcid.org/0000-0001-5037-2695, Wang, J. et al. (24 more authors) (2015) Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis. Nature Communications, 6. ARTN 6740. ISSN 2041-1723

Howell, K.J., Weinert, L.A., Chaudhuri, R.R. orcid.org/0000-0001-5037-2695 et al. (16 more authors) (2014) The use of genome wide association methods to investigate pathogenicity, population structure and serovar in Haemophilus parasuis. BMC Genomics, 15. ARTN 1179. ISSN 1471-2164

Wilson, R., Bourne, C., Chaudhuri, R.R. orcid.org/0000-0001-5037-2695 et al. (3 more authors) (2014) Single-Step Selection of Bivalent Aptamers Validated by Comparison with SELEX Using High-Throughput Sequencing. PLoS ONE, 9 (6). e100572. ISSN 1932-6203

Christiansen, M.T., Kaas, R.S., Chaudhuri, R.R. orcid.org/0000-0001-5037-2695 et al. (3 more authors) (2014) Genome-Wide High-Throughput Screening to Investigate Essential Genes Involved in Methicillin-Resistant Staphylococcus aureus Sequence Type 398 Survival. PLoS ONE, 9 (2). e89018. ISSN 1932-6203

Chaudhuri, R.R. orcid.org/0000-0001-5037-2695, Morgan, E., Peters, S.E. et al. (15 more authors) (2013) Comprehensive Assignment of Roles for Salmonella Typhimurium Genes in Intestinal Colonization of Food-Producing Animals. PLoS Genetics, 9 (4). ARTN e1003456. ISSN 1553-7390

Chaudhuri, R.R., Peters, S.E., Pleasance, S.J. et al. (11 more authors) (2009) Comprehensive Identification of Salmonella enterica Serovar Typhimurium Genes Required for Infection of BALB/c Mice. PLoS Pathogens, 5 (7). e1000529. ISSN 1553-7374

Preprint

Buddle, J.E. orcid.org/0000-0002-7259-0527, Wright, R.C.T. orcid.org/0000-0002-8095-8256, Turner, C.E. orcid.org/0000-0002-4458-9748 et al. (3 more authors) (2023) Multiple evolutionary pathways lead to vancomycin resistance in Clostridioides difficile. [Preprint] (Submitted)

Ormsby, M.J., Vaz, F., Kirk, J.A. et al. (8 more authors) (2022) An intact S-layer is advantageous to Clostridioides difficile within the host. [Preprint] (Submitted)