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Arias, A, Watson, SJ, Asogun, D et al. (59 more authors) (2016) Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases. Virus Evolution, 2 (1). vew016.

Bartlett, C, Curd, A orcid.org/0000-0002-3949-7523, Peckham, M orcid.org/0000-0002-3754-2028 et al. (1 more author) (2018) Visualisation and analysis of hepatitis C virus non-structural proteins using super-resolution microscopy. Scientific Reports, 8 (1). ARTN 13604. ISSN 2045-2322

Buchanan, F.J.T., Chen, S., Harris, M. orcid.org/0000-0002-9821-1003 et al. (1 more author) (2023) The hepatitis E virus ORF1 hypervariable region confers partial cyclophilin dependency. Journal of General Virology, 104 (11). 001919. ISSN 0022-1317

Campos, GRF, Bittar, C, Jardim, ACG et al. (9 more authors) (2017) Hepatitis C virus in vitro replication is efficiently inhibited by acridone Fac4. Journal of General Virology, 98 (7). pp. 1693-1701. ISSN 0022-1317

Chen, S. and Harris, M. orcid.org/0000-0002-9821-1003 (2023) Mutational analysis reveals a novel role for hepatitis C virus NS5A domain I in cyclophilin-dependent genome replication. The Journal of General Virology, 104 (9). ISSN 0022-1317

Chen, S and Harris, M orcid.org/0000-0002-9821-1003 (2023) NS5A domain I antagonises PKR to facilitate the assembly of infectious hepatitis C virus particles. PLoS Pathogens, 19 (2). e1010812. ISSN 1553-7366

Easton, V, McPhillie, M, Garcia-Dorival, I et al. (5 more authors) (2018) Identification of a small molecule inhibitor of Ebolavirus genome replication and transcription using in silico screening. Antiviral Research, 156. pp. 46-54. ISSN 0166-3542

Fernandes Campos, GR, Ward, J orcid.org/0000-0001-9867-393X, Chen, S et al. (7 more authors) (2020) A novel substitution in NS5A enhances the resistance of hepatitis C virus genotype 3 to daclatasvir. Journal of General Virology. ISSN 0022-1317

Foster, TL, Thompson, GS, Kalverda, AP et al. (13 more authors) (2014) Structure-guided design affirms inhibitors of hepatitis C virus p7 as a viable class of antivirals targeting virion release. Hepatology, 59 (2). pp. 408-422. ISSN 0270-9139

Gao, Y, Goonawardane, N, Ward, J orcid.org/0000-0001-9867-393X et al. (2 more authors) (2019) Multiple roles of the non-structural protein 3 (nsP3) alphavirus unique domain (AUD) during Chikungunya virus genome replication and transcription. PLoS Pathogens, 15 (1). e1007239. ISSN 1553-7366

Goonawardane, N, Gebhardt, A, Bartlett, C et al. (2 more authors) (2017) Phosphorylation of serine 225 in hepatitis C virus NS5A regulates protein-protein interactions. Journal of Virology, 91 (17). e00805-17. ISSN 0022-538X

Goonawardane, N, Ross-Thriepland, D and Harris, M orcid.org/0000-0002-9821-1003 (2018) Regulation of hepatitis C virus replication via threonine phosphorylation of the NS5A protein. The Journal of General Virology, 99 (1). pp. 62-72. ISSN 0022-1317

Goonawardane, N, Yin, C and Harris, M orcid.org/0000-0002-9821-1003 (2020) Phenotypic analysis of mutations at residue 146 provides insights into the relationship between NS5A hyperphosphorylation and hepatitis C virus genome replication. Journal of General Virology, 101 (3). pp. 252-264. ISSN 0022-1317

Goonawardane, N, Upstone, L, Harris, M orcid.org/0000-0002-9821-1003 et al. (1 more author) (2022) Identification of Host Factors Differentially Induced by Clinically Diverse Strains of Tick-Borne Encephalitis Virus. Journal of Virology, 96 (18). ISSN 0022-538X

Groppelli, E orcid.org/0000-0003-4241-2858, Levy, HC, Sun, E et al. (7 more authors) (2017) Picornavirus RNA is protected from cleavage by ribonuclease during virion uncoating and transfer across cellular and model membranes. PLoS Pathogens, 13 (2). e1006197. ISSN 1553-7366

Harris, M orcid.org/0000-0002-9821-1003 (2020) Microbiology Society online workshop on SARS-CoV-2 and COVID-19, Wednesday 29 July 2020. Journal of General Virology. ISSN 0022-1317

Harris, M orcid.org/0000-0002-9821-1003 and Duprex, WP (2018) Whether you are a virus or a learned society-based virology journal, evolution is critical for success! Journal of General Virology, 99 (1). pp. 1-2. ISSN 0022-1317

Herod, MR, Adeyemi, OO orcid.org/0000-0002-0848-5917, Ward, J et al. (4 more authors) (2019) The broad-spectrum antiviral drug arbidol inhibits foot-and-mouth disease virus genome replication. The Journal of General Virology, 100 (9). 001283. pp. 1293-1302. ISSN 0022-1317

Herod, MR orcid.org/0000-0002-8626-6787, Ward, J, Tuplin, A orcid.org/0000-0003-2524-707X et al. (3 more authors) (2022) Positive strand RNA viruses differ in the constraints they place on the folding of their negative strand. RNA. ISSN 1355-8382

Jardim, ACG, Shimizu, JF, Rahal, P et al. (1 more author) (2018) Plant-derived antivirals against hepatitis c virus infection. Virology Journal, 15. 34. ISSN 1743-422X

Kelly, L, Badhan, A, Roberts, GC orcid.org/0000-0003-4687-6940 et al. (2 more authors) (2017) Manipulation of both virus- and cell-specific factors is required for robust transient replication of a hepatitis C virus genotype 3a sub-genomic replicon. Journal of General Virology, 98. pp. 2495-2506. ISSN 0022-1317

Lattimer, J, Stewart, H, Locker, N et al. (3 more authors) (2019) Structure–function analysis of the equine hepacivirus 5′ untranslated region highlights the conservation of translational mechanisms across the hepaciviruses. Journal of General Virology, 100 (11). pp. 1501-1514. ISSN 0022-1317

Li, R., Sun, K., Tuplin, A. orcid.org/0000-0003-2524-707X et al. (1 more author) (2023) A structural and functional analysis of opal stop codon translational readthrough during Chikungunya virus replication. Journal of General Virology, 104 (10). 001909. ISSN 0022-1317

Loundras, E-A, Streetley, J, Herod, MR orcid.org/0000-0002-8626-6787 et al. (4 more authors) (2022) Higher-order structures of the foot-and-mouth disease virus RNA-dependent RNA polymerase required for genome replication. Communications Biology, 5. 61. ISSN 2399-3642

Pierce, D.M., Buchanan, F.J.T., Macrae, F.L. et al. (8 more authors) (2023) Thrombin cleavage of the hepatitis E virus polyprotein at multiple conserved locations is required for genome replication. PLOS Pathogens, 19 (7). e1011529. ISSN 1553-7366

Remenyi, R orcid.org/0000-0003-1644-6464, Gao, Y, Hughes, RE orcid.org/0000-0001-6167-8286 et al. (5 more authors) (2018) Persistent Replication of a Chikungunya Virus Replicon in Human Cells is Associated with Presence of Stable Cytoplasmic Granules Containing Non-structural Protein 3. Journal of Virology, 92 (16). e00477-18. pp. 1-24. ISSN 0022-538X

Remenyi, R, Li, R orcid.org/0000-0002-8733-1624 and Harris, M orcid.org/0000-0002-9821-1003 (2019) On-demand Labeling of SNAP-tagged Viral Protein for Pulse-Chase Imaging, Quench-Pulse-Chase Imaging, and Nanoscopy-based Inspection of Cell Lysates. Bio-protocol, 9 (4). ARTN e3177. ISSN 2331-8325

Remenyi, R orcid.org/0000-0003-1644-6464, Roberts, GC orcid.org/0000-0003-4687-6940, Zothner, C et al. (2 more authors) (2017) SNAP-tagged Chikungunya Virus Replicons Improve Visualisation of Non-Structural Protein 3 by Fluorescence Microscopy. Scientific Reports, 7. 5682. pp. 1-15. ISSN 2045-2322

Roberts, GC orcid.org/0000-0003-4687-6940, Zothner, C, Remenyi, R orcid.org/0000-0003-1644-6464 et al. (3 more authors) (2017) Evaluation of a range of mammalian and mosquito cell lines for use in Chikungunya virus research. Scientific Reports, 7. 14641. ISSN 2045-2322

Ross-Thriepland, D and Harris, M orcid.org/0000-0002-9821-1003 (2014) Insights into the complexity and functionality of hepatitis C virus NS5A phosphorylation. Journal of Virology, 88 (3). pp. 1421-1432. ISSN 0022-538X

Ross-Thriepland, D, Mankouri, J orcid.org/0000-0002-4325-3687 and Harris, M orcid.org/0000-0002-9821-1003 (2015) Serine Phosphorylation of the Hepatitis C Virus NS5A Protein Controls the Establishment of Replication Complexes. Journal of Virology, 89 (6). pp. 3123-3135. ISSN 0022-538X

Santos, IA, Shimizu, JF, de Oliveira, DM et al. (10 more authors) (2021) Chikungunya virus entry is strongly inhibited by phospholipase A2 isolated from the venom of Crotalus durissus terrificus. Scientific Reports, 11 (1). 8717. ISSN 2045-2322

Shimizu, JF, Lima, CS, Pereira, CM et al. (9 more authors) (2017) Flavonoids from Pterogyne nitens Inhibit Hepatitis C Virus Entry. Scientific Reports, 7 (1). 16127. 16127-. ISSN 2045-2322

Shimizu, JF, Martins, DOS, McPhillie, MJ orcid.org/0000-0001-8264-8211 et al. (5 more authors) (2020) Is the ADP ribose site of the Chikungunya virus NSP3 Macro domain a target for antiviral approaches? Acta Tropica, 207. 105490. p. 105490. ISSN 0001-706X

Shimizu, JF, Pereira, CM, Bittar, C et al. (10 more authors) (2017) Multiple effects of toxins isolated from Crotalus durissus terrificus on the hepatitis C virus life cycle. PLoS ONE, 12 (11). e0187857. ISSN 1932-6203

Shimizu, JF, Feferbaum-Leite, S, Santos, IA et al. (8 more authors) (2023) Effect of proteins isolated from Brazilian snakes on enterovirus A71 replication cycle: An approach against hand, foot and mouth disease. International Journal of Biological Macromolecules, 241. 124519. ISSN 0141-8130

Silva, S, Shimizu, JF, Oliveira, DMD et al. (16 more authors) (2019) A diarylamine derived from anthranilic acid inhibits ZIKV replication. Scientific Reports, 9 (1). ARTN: 17703.

Smirnov, A. orcid.org/0000-0002-1575-8725, Magri, A. orcid.org/0000-0002-7143-7168, Lotz, R. orcid.org/0000-0001-9922-3252 et al. (7 more authors) (2023) ASPP2 binds to hepatitis C virus NS5A protein via an SH3 domain/PxxP motif-mediated interaction and potentiates infection. Journal of General Virology, 104 (9). 001895. ISSN 0022-1317

Stertz, S, Duprex, WP and Harris, M orcid.org/0000-0002-9821-1003 (2018) A novel mutation in the neuraminidase gene of the 2009 pandemic H1N1 influenza A virus confers multidrug resistance. Journal of General Virology, 99 (3). pp. 275-276. ISSN 0022-1317

Upstone, L, Colley, R, Harris, M orcid.org/0000-0002-9821-1003 et al. (1 more author) (2023) Functional characterization of 5′ untranslated region (UTR) secondary RNA structures in the replication of tick-borne encephalitis virus in mammalian cells. PLoS Neglected Tropical Diseases, 17 (1). e0011098. ISSN 1935-2727

Ward, JC orcid.org/0000-0001-9867-393X, Bowyer, S, Chen, S et al. (4 more authors) (2020) Insights into the unique characteristics of hepatitis C virus genotype 3 revealed by development of a robust sub-genomic DBN3a replicon. Journal of General Virology. ISSN 0022-1317

Wei, B, Han, L, Abbink, TEM et al. (10 more authors) (2013) Immune adaptor ADAP in T cells regulates HIV-1 transcription and cell-cell viral spread via different co-receptors. Retrovirology, 10 (1). 101. p. 101. ISSN 1742-4690

Willcocks, MM, Zaini, S, Chamond, N et al. (11 more authors) (2017) Distinct roles for the IIId2 sub-domain in pestivirus and picornavirus internal ribosome entry sites. Nucleic Acids Research, 45 (22). pp. 13016-13028. ISSN 0305-1048

Yin, C, Goonawardane, N, Stewart, H et al. (1 more author) (2018) A role for domain I of the hepatitis C virus NS5A protein in virus assembly. PLoS Pathogens, 14 (1). e1006834. ISSN 1553-7366

de Oliveira, DM, Santos, IDA, Martins, DOS et al. (10 more authors) (2020) Organometallic Complex Strongly Impairs Chikungunya Virus Entry to the Host Cells. Frontiers in Microbiology, 11. 608924. ISSN 1664-302X

Other

Parish, T, Harris, M orcid.org/0000-0002-9821-1003, Fry, N et al. (4 more authors) (2018) DORA Editorial. Microbiology Society.

Parish, T, Harris, M orcid.org/0000-0002-9821-1003, Fry, N et al. (4 more authors) (2018) DORA Editorial. Microbiology Society.