Comber, A. orcid.org/0000-0002-3652-7846, Zormpas, E., Queen, R. et al. (1 more author) (2024) Lessons from spatial transcriptomics and computational geography in mapping the transcriptome. AGILE: GIScience Series, 5. 21. ISSN 2700-8150
Abstract
Spatial data, data with some form of location attached, are the norm: all data are spatial now. However spatial data requires consideration of three critical characteristics, observation spatial auto-correlated, process spatially non-stationarity and the effect of the MAUP. Geographers are familiar with these and have tools, rubrics and workflows to accommodate them and understand their impacts on statical inference, understanding and prediction. However, increasingly researchers in non geographical domains, with no experience of, or exposure to quantitative geography or GIScience are undertaking analyses of such data without full or any understanding of the impacts of these spatial data properties. This short paper describes recent interactions and work with research in gene analysis and Spatial Transcriptomics, and highlight the opportunities for GIScience to inform and steer the many new users of spatial data.
Metadata
Item Type: | Article |
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Authors/Creators: |
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Copyright, Publisher and Additional Information: | © Author(s) 2024. This is an open access article under the terms of the Creative Commons Attribution License (CC-BY 4.0), which permits unrestricted use, distribution and reproduction in any medium, provided the original work is properly cited. |
Keywords: | Spatial data, Molecular Biology, GIScience, Spatial autocorrelation, the MAUP, Process spatial non-stationarity |
Dates: |
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Institution: | The University of Leeds |
Academic Units: | The University of Leeds > Faculty of Environment (Leeds) > School of Geography (Leeds) > Centre for Spatial Analysis & Policy (Leeds) |
Depositing User: | Symplectic Publications |
Date Deposited: | 10 Jul 2024 13:31 |
Last Modified: | 10 Jul 2024 13:31 |
Status: | Published |
Publisher: | Copernicus Publications |
Identification Number: | 10.5194/agile-giss-5-21-2024 |
Open Archives Initiative ID (OAI ID): | oai:eprints.whiterose.ac.uk:214316 |