Dialpuri, Jordan S, Bagdonas, Haroldas, Schofield, Lucy C et al. (3 more authors) (2024) Monitoring carbohydrate 3D structure quality with the Privateer database. Beilstein Journal of Organic Chemistry. pp. 931-939. ISSN 1860-5397
Abstract
The remediation of the carbohydrate data of the Protein Data Bank (PDB) has brought numerous enhancements to the findability and interpretability of deposited glycan structures, yet crucial quality indicators are either missing or hard to find on the PDB pages. Without a way to access wider glycochemical context, problematic structures may be taken as fact by keen but inexperienced scientists. The Privateer software is a validation and analysis tool that provides access to a number of metrics and links to external experimental resources, allowing users to evaluate structures using carbohydrate-specific methods. Here, we present the Privateer database, a free resource that aims to complement the growing glycan content of the PDB.
Metadata
Item Type: | Article |
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Authors/Creators: |
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Copyright, Publisher and Additional Information: | Copyright © 2024, Dialpuri et al. |
Dates: |
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Institution: | The University of York |
Academic Units: | The University of York > Faculty of Sciences (York) > Chemistry (York) The University of York > Faculty of Sciences (York) > Physics (York) |
Depositing User: | Pure (York) |
Date Deposited: | 14 May 2024 09:10 |
Last Modified: | 22 Oct 2024 00:09 |
Published Version: | https://doi.org/10.3762/bjoc.20.83 |
Status: | Published |
Refereed: | Yes |
Identification Number: | 10.3762/bjoc.20.83 |
Open Archives Initiative ID (OAI ID): | oai:eprints.whiterose.ac.uk:212513 |