Madkhali, Marwah M.M., Rankine, Conor D. orcid.org/0000-0002-7104-847X and Penfold, Thomas J. (2021) Enhancing the Analysis of Disorder in X-ray Absorption Spectra:Application of Deep Neural Networks to T-jump-X-ray Probe Experiments. Physical Chemistry Chemical Physics. pp. 9259-9269. ISSN 1463-9084
Abstract
Many chemical and biological reactions, including ligand exchange processes, require thermal energy for the reactants to overcome a transition barrier and reach the product state. Temperature-jump (T-jump) spectroscopy uses a near-infrared (NIR) pulse to rapidly heat a sample, offering an approach for triggering these processes and directly accessing thermally-activated pathways. However, thermal activation inherently increases the disorder of the system under study and, as a consequence, can make quantitative interpretations of structural changes challenging. In this Article, we optimise a deep neural network (DNN) for the instantaneous prediction of Co K-edge X-ray absorption near-edge structure (XANES) spectra. We apply our DNN to analyse T-jump pump/X-ray probe data pertaining to the ligand exchange processes and solvation dynamics of Co2+in chlorinated aqueous solution. Our analysis is greatly facilitated by machine learning, as our DNN is able to predict quickly and cost-effectively the XANES spectra of thousands of geometric configurations sampled fromab initiomolecular dynamics (MD) using nothing more than the local geometric environment around the X-ray absorption site. We identify directly the structural changes following the T-jump, which are dominated by sample heating and a commensurate increase in the Debye-Waller factor.
Metadata
Item Type: | Article |
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Authors/Creators: |
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Copyright, Publisher and Additional Information: | © the Owner Societies 2021 |
Dates: |
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Institution: | The University of York |
Depositing User: | Pure (York) |
Date Deposited: | 24 Aug 2022 09:00 |
Last Modified: | 21 Jan 2025 18:04 |
Published Version: | https://doi.org/10.1039/d0cp06244h |
Status: | Published |
Refereed: | Yes |
Identification Number: | 10.1039/d0cp06244h |
Related URLs: | |
Open Archives Initiative ID (OAI ID): | oai:eprints.whiterose.ac.uk:190338 |
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Description: Enhancing the analysis of disorder in X-ray absorption spectra: application of deep neural networks to T-jump-X-ray probe experiments
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