Data on whole genome shotgun sequencing report of clinical S. maltophilia strains from India

Abstract

Stenotrophomonas maltophilia is an important emerging nosocomial pathogen with broad level multi-drug resistance. There is a lack of genomic information on S. maltophilia to understand the antimicrobial resistance (AMR) mechanism behind. The data article reports on whole genome sequence information of 9 clinical S. maltophilia strains isolated from a tertiary care hospital in India. Isolates were sequenced using Ion Torrent PGM platform. Raw reads were assembled and annotated, where the genome size ranged from ~ 3.2 to ~ 4.5 Mb with average 57.6× coverage. AMR genes blaL1, blaL2, Smqnr, aac(6׳)-lz and aph(3׳)-llc were observed among the isolates in addition to multiple virulence factors. Five isolates were identified to be ST15, ST283, ST284, ST285 and ST286.

Metadata

Item Type:	Article
Authors/Creators:	Devanga Ragupathi, N.K. https://orcid.org/0000-0001-8667-7132 Veeraraghavan, B.
Copyright, Publisher and Additional Information:	& 2018 The Authors. Published by Elsevier Inc. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
Dates:	Accepted: 1 October 2018 Published (online): 4 October 2018 Published: December 2018
Institution:	The University of Sheffield
Academic Units:	The University of Sheffield > Faculty of Engineering (Sheffield) > Department of Chemical and Biological Engineering (Sheffield)
Depositing User:	Symplectic Sheffield
Date Deposited:	18 Jul 2019 13:27
Last Modified:	18 Jul 2019 13:36
Status:	Published
Publisher:	Elsevier
Refereed:	Yes
Identification Number:	10.1016/j.dib.2018.10.005
Related URLs:	PubMed URL
Open Archives Initiative ID (OAI ID):	oai:eprints.whiterose.ac.uk:148687

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Data on whole genome shotgun sequencing report of clinical S. maltophilia strains from India

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