Items where authors include "Kalli, AC"

Article

Prakaash, D, Fagnen, C, Cook, GP et al. (2 more authors) (2022) Molecular dynamics simulations reveal membrane lipid interactions of the full-length lymphocyte specific kinase Lck. Scientific Reports, 12. 21121. ISSN 2045-2322

Holmes, AOM orcid.org/0000-0002-5139-2986, Goldman, A and Kalli, AC orcid.org/0000-0001-7156-9403 (2022) mPPases create a conserved anionic membrane fingerprint as identified via multi-scale simulations. PLoS Computational Biology, 18 (10). e1010578. ISSN 1553-734X

Jackson, V, Hermann, J, Tynan, CJ et al. (11 more authors) (2022) The guidance and adhesion protein FLRT2 dimerizes in cis via dual small-X3-small transmembrane motifs. Structure, 30 (9). pp. 1354-1365. ISSN 0969-2126

Kalli, AC orcid.org/0000-0001-7156-9403 and Reithmeier, RAF (2022) Organization and Dynamics of the Red Blood Cell Band 3 Anion Exchanger SLC4A1: Insights From Molecular Dynamics Simulations. Frontiers in Physiology, 13. 817945. ISSN 1664-042X

Wang, B, Lane, BJ, Kapsalis, C et al. (6 more authors) (2022) Pocket delipidation induced by membrane tension or modification leads to a structurally analogous mechanosensitive channel state. Structure. ISSN 0969-2126

Lanz, A-L, Masi, G, Porciello, N et al. (13 more authors) (2021) Allosteric activation of T cell antigen receptor signaling by quaternary structure relaxation. Cell Reports, 36 (2). 109375. ISSN 2211-1247

Prakaash, D orcid.org/0000-0002-2209-9713, Cook, GP orcid.org/0000-0003-0223-3652, Acuto, O et al. (1 more author) (2021) Multi-scale simulations of the T cell receptor reveal its lipid interactions, dynamics and the arrangement of its cytoplasmic region. PLoS Computational Biology, 17 (7). e1009232. ISSN 1553-734X

Chong, J orcid.org/0000-0002-5846-7397, De Vecchis, D, Hyman, AJ et al. (5 more authors) (2021) Modelling of full-length Piezo1 suggests importance of the proximal N-terminus for dome structure. Biophysical Journal, 120 (8). pp. 1343-1356. ISSN 0006-3495

De Vecchis, D, Beech, DJ orcid.org/0000-0002-7683-9422 and Kalli, AC orcid.org/0000-0001-7156-9403 (2021) Molecular dynamics simulations of Piezo1 channel opening by increases in membrane tension. Biophysical Journal, 120 (8). P1510-P1521. ISSN 0006-3495

Soteriou, C, Kalli, AC orcid.org/0000-0001-7156-9403, Connell, SD orcid.org/0000-0003-2500-5724 et al. (2 more authors) (2021) Advances in understanding and in multi-disciplinary methodology used to assess lipid regulation of signalling cascades from the cancer cell plasma membrane. Progress in Lipid Research, 81. 101080. ISSN 0163-7827

Iadanza, MG, Schiffrin, B, White, P orcid.org/0000-0001-7536-4552 et al. (9 more authors) (2020) Distortion of the bilayer and dynamics of the BAM complex in lipid nanodiscs. Communications Biology, 3. 766. ISSN 2399-3642

Shi, J, Hyman, AJ, De Vecchis, D et al. (8 more authors) (2020) Sphingomyelinase Disables Inactivation in Endogenous PIEZO1 Channels. Cell Reports, 33 (1). 108225. ISSN 2211-1247

Calabrese, AN, Schiffrin, B, Watson, M et al. (11 more authors) (2020) Inter-domain dynamics in the chaperone SurA and multi-site binding to its outer membrane protein clients. Nature Communications, 11. 2155. ISSN 2041-1723

Evans, EL, Povstyan, OV, De Vecchis, D orcid.org/0000-0002-7732-5095 et al. (9 more authors) (2020) RBCs prevent rapid PIEZO1 inactivation and expose slow deactivation as a mechanism of DHS. Blood. ISSN 0006-4971

Yamamoto, E, Domański, J, Naughton, FB et al. (4 more authors) (2020) Multiple lipid binding sites determine the affinity of PH domains for phosphoinositide-containing membranes. Science Advances, 6 (8). eaay5736. ISSN 2375-2548

Holmes, AOM, Kalli, AC orcid.org/0000-0001-7156-9403 and Goldman, A orcid.org/0000-0001-8032-9700 (2019) The Function of Membrane Integral Pyrophosphatases From Whole Organism to Single Molecule. Frontiers in Molecular Biosciences, 6. 132. ISSN 2296-889X

Beech, DJ and Kalli, AC orcid.org/0000-0001-7156-9403 (2019) Force Sensing by Piezo Channels in Cardiovascular Health and Disease. Arteriosclerosis, Thrombosis, and Vascular Biology, 39 (11). pp. 2228-2239. ISSN 1079-5642

De Vecchis, D orcid.org/0000-0002-7732-5095, Reithmeier, RAF and Kalli, AC orcid.org/0000-0001-7156-9403 (2019) Molecular Simulations of Intact Anion Exchanger 1 Reveal Specific Domain and Lipid Interactions. Biophysical Journal, 117 (7). pp. 1364-1379. ISSN 0006-3495

Amos, S-BTA, Kalli, AC orcid.org/0000-0001-7156-9403, Shi, J et al. (1 more author) (2019) Membrane Recognition and Binding by the Phosphatidylinositol Phosphate Kinase PIP5K1A: A Multiscale Simulation Study. Structure, 27 (8). 1336-1346.e2. ISSN 0969-2126

Xanthis, I, Souilhol, C, Serbanovic-Canic, J et al. (15 more authors) (2019) β1 integrin is a sensor of blood flow direction. Journal of Cell Science, 132 (11). jcs229542. ISSN 0021-9533

Pyle, E, Kalli, AC orcid.org/0000-0001-7156-9403, Amillis, S et al. (6 more authors) (2018) Structural Lipids Enable the Formation of Functional Oligomers of the Eukaryotic Purine Symporter UapA. Cell Chemical Biology, 25 (7). 840-848.e4. ISSN 2451-9456

Kalli, AC orcid.org/0000-0001-7156-9403 and Reithmeier, RAF (2018) Interaction of the human erythrocyte Band 3 anion exchanger 1 (AE1, SLC4A1) with lipids and glycophorin A: Molecular organization of the Wright (Wr) blood group antigen. PLoS Computational Biology, 14 (7). e1006284. ISSN 1553-734X

Chavent, M, Karia, D, Kalli, AC orcid.org/0000-0001-7156-9403 et al. (7 more authors) (2018) Interactions of the EphA2 Kinase Domain with PIPs in Membranes: Implications for Receptor Function. Structure, 26 (7). pp. 1025-1034. ISSN 0969-2126

Posner, MG, Upadhyay, A, Ishima, R et al. (6 more authors) (2018) Distinctive phosphoinositide- and Ca²⁺-binding properties of normal and cognitive performance–linked variant forms of KIBRA C2 domain. Journal of Biological Chemistry, 293 (24). pp. 9335-9344. ISSN 0021-9258

Naughton, FN, Kalli, AC orcid.org/0000-0001-7156-9403 and Sansom, MSP (2018) Modes of Interaction of Pleckstrin Homology Domains with Membranes: Toward a Computational Biochemistry of Membrane Recognition. Journal of Molecular Biology, 430 (3). pp. 372-388. ISSN 0022-2836

Schiffrin, R, Calabrese, AN, Higgins, AJ et al. (5 more authors) (2017) Effects of Periplasmic Chaperones and Membrane Thickness on BamA-Catalyzed Outer-Membrane Protein Folding. Journal of Molecular Biology, 429. pp. 3776-3792. ISSN 0022-2836

Kalli, AC orcid.org/0000-0001-7156-9403, Rog, T, Vattulainen, I et al. (2 more authors) (2017) The Integrin Receptor in Biologically Relevant Bilayers: Insights from Molecular Dynamics Simulations. Journal of Membrane Biology, 250 (4). pp. 337-351. ISSN 0022-2631

Ni, T, Kalli, AC orcid.org/0000-0001-7156-9403, Naughton, FB et al. (6 more authors) (2017) Structure and lipid binding properties of the kindlin-3 pleckstrin homology domain. Biochemical Journal, 474 (4). pp. 539-556. ISSN 0264-6021

Yamamoto, E, Akimoto, T, Kalli, AC orcid.org/0000-0001-7156-9403 et al. (2 more authors) (2017) Dynamic interactions between a membrane binding protein and lipids induce fluctuating diffusivity. Science Advances, 3 (1). e1601871. ISSN 2375-2548

Hughes, AV, Ciesielski, F, Kalli, AC orcid.org/0000-0001-7156-9403 et al. (4 more authors) (2016) On the interpretation of reflectivity data from lipid bilayers in terms of molecular-dynamics models. Acta Crystallographica Section D: Structural Biology, 72 (12). pp. 1227-1240.

Yamamoto, E, Kalli, AC orcid.org/0000-0001-7156-9403, Yasuoka, K et al. (1 more author) (2016) Interactions of Pleckstrin Homology Domains with Membranes: Adding Back the Bilayer via High-Throughput Molecular Dynamics. Structure, 24 (8). pp. 1421-1431. ISSN 0969-2126

Buyan, A, Kalli, AC orcid.org/0000-0001-7156-9403 and Sansom, MSP (2016) Multiscale Simulations Suggest a Mechanism for the Association of the Dok7 PH Domain with PIP-Containing Membranes. PLoS Computational Biology, 12 (7). e1005028. ISSN 1553-734X

Reithmeier, RAF, Casey, JR, Kalli, AC orcid.org/0000-0001-7156-9403 et al. (3 more authors) (2016) Band 3, the human red cell chloride/bicarbonate anion exchanger (AE1, SLC4A1), in a structural context. Biochimica et Biophysica Acta (BBA) - Biomembranes, 1858 (7, Part A). pp. 1507-1532. ISSN 0005-2736

Naughton, FB, Kalli, AC orcid.org/0000-0001-7156-9403 and Sansom, MSP (2016) Association of Peripheral Membrane Proteins with Membranes: Free Energy of Binding of GRP1 PH Domain with Phosphatidylinositol Phosphate-Containing Model Bilayers. Journal of Physical Chemistry Letters, 7 (7). pp. 1219-1224.

Conference or Workshop Item

Soteriou, C, Kalli, AC, Connell, SD et al. (2 more authors) (2021) Dietary phytosterols impair oncogene signalling via modulation of membrane properties. In: The Nutrition Society Summer Conference : Nutrition in a Changing World, 06-08 Jul 2021, Online.

Preprint

Cheng, CW orcid.org/0000-0002-2873-0828, Deivasikamani, V, Ludlow, MJ et al. (4 more authors) (2020) Genetic variants of PIEZO1 associate with COVID-19 fatality. [Preprint]