Items where authors include "Paci, E"

Article

Bruce, AJE, Paci, E and Brockwell, DJ orcid.org/0000-0002-0802-5937 (2023) Collagen-like motifs of SasG: a novel fold for protein mechanical strength. Journal of Molecular Biology, 435 (6). 167980. ISSN 0022-2836

Stofella, M, Skinner, SP, Sobott, F orcid.org/0000-0001-9029-1865 et al. (2 more authors) (2022) High-Resolution Hydrogen-Deuterium Protection Factors from Sparse Mass Spectrometry Data Validated by Nuclear Magnetic Resonance Measurements. Journal of The American Society for Mass Spectrometry, 33 (5). pp. 813-822. ISSN 1044-0305

Skinner, SP, Follmer, AH, Ubbink, M et al. (3 more authors) (2021) Partial Opening of Cytochrome P450cam (CYP101A1) Is Driven by Allostery and Putidaredoxin Binding. Biochemistry. ISSN 0006-2960

Whelan, F, Lafita, A, Gilburt, J et al. (10 more authors) (2021) Periscope Proteins are variable-length regulators of bacterial cell surface interactions. Proceedings of the National Academy of Sciences, 118 (23). e2101349118. ISSN 0027-8424

Batchelor, M orcid.org/0000-0001-6338-5698, Papachristos, K, Stofella, M et al. (2 more authors) (2020) Protein mechanics probed using simple molecular models. Biochimica et Biophysica Acta (BBA) - General Subjects, 1864 (8). 129613. ISSN 0304-4165

Whelan, F, Lafita, A, Griffiths, SC et al. (8 more authors) (2019) Defining the remarkable structural malleability of a bacterial surface protein Rib domain implicated in infection. Proceedings of the National Academy of Sciences of the United States of America. 201911776. ISSN 0027-8424

Hao, Y, England, JP, Bellucci, L et al. (4 more authors) (2019) Activation of PKA via asymmetric allosteric coupling of structurally conserved cyclic nucleotide binding domains. Nature Communications, 10. 3984. ISSN 2041-1723

Lepsik, M, Sommer, R, Kuhaudomlarp, S et al. (5 more authors) (2019) Induction of rare conformation of oligosaccharide by binding to calcium-dependent bacterial lectin: X-ray crystallography and modelling study. European Journal of Medicinal Chemistry, 177. pp. 212-220. ISSN 0223-5234

Radom, F, Paci, E orcid.org/0000-0002-4891-2768 and Plückthun, A (2019) Computational Modeling of Designed Ankyrin Repeat Protein Complexes with their Targets. Journal of Molecular Biology, 431 (15). pp. 2852-2868. ISSN 0022-2836

Ross, JF, Wildsmith, GC, Johnson, M et al. (9 more authors) (2019) Directed Assembly of Homopentameric Cholera Toxin B‑Subunit Proteins into Higher-Order Structures Using Coiled-Coil Appendages. Journal of the American Chemical Society, 141 (13). pp. 5211-5219. ISSN 0002-7863

Wodak, SJ, Paci, E orcid.org/0000-0002-4891-2768, Dokholyan, NV et al. (36 more authors) (2019) Allostery in Its Many Disguises: From Theory to Applications. Structure, 27 (4). pp. 566-578. ISSN 0969-2126

Skinner, SP, Radou, G, Tuma, R orcid.org/0000-0003-0047-0013 et al. (2 more authors) (2019) Estimating Constraints for Protection Factors from HDX-MS Data. Cell Press, 116 (7). pp. 1194-1203. ISSN 0006-3495

Batchelor, M orcid.org/0000-0001-6338-5698, Wolny, M, Baker, EG et al. (3 more authors) (2019) Dynamic ion pair behavior stabilizes single alpha helices in proteins. Journal of Biological Chemistry, 294 (9). pp. 3219-3234. ISSN 0021-9258

Batchelor, M orcid.org/0000-0001-6338-5698 and Paci, E orcid.org/0000-0002-4891-2768 (2018) Helical Polyampholyte Sequences Have Unique Thermodynamic Properties. Journal of Physical Chemistry B, 122 (49). pp. 11784-11791. ISSN 1520-6106

Radom, F, Plückthun, A and Paci, E orcid.org/0000-0002-4891-2768 (2018) Assessment of ab initio models of protein complexes by molecular dynamics. PLoS computational biology, 14 (6). e1006182-e1006182. ISSN 1553-734X

Gómez Santiago, C, Paci, E orcid.org/0000-0002-4891-2768 and Donnelly, D orcid.org/0000-0001-6048-6995 (2018) A mechanism for agonist activation of the glucagon-like peptide-1 (GLP-1) receptor through modelling & molecular dynamics. Biochemical and Biophysical Research Communications, 498 (2). pp. 359-365. ISSN 0006-291X

Gowdy, J, Batchelor, M, Neelov, I et al. (1 more author) (2017) Non-Exponential Kinetics of Loop Formation in Proteins and Peptides: A Signature of Rugged Free Energy Landscapes? Journal of Physical Chemistry B, 121 (41). pp. 9518-9525. ISSN 1520-6106

Hickman, SJ, Cooper, REM, Bellucci, L et al. (2 more authors) (2017) Gating of TonB-dependent transporters by substrate-specific forced remodelling. Nature Communications, 8. 14804. ISSN 2041-1723

Wolny, M, Batchelor, M, Bartlett, GJ et al. (7 more authors) (2017) Characterization of long and stable de novo single alpha-helix domains provides novel insight into their stability. Scientific Reports, 7. 44341. ISSN 2045-2322

O'Connor, M, Paci, E orcid.org/0000-0002-4891-2768, McIntosh-Smith, S et al. (1 more author) (2016) Adaptive free energy sampling in multidimensional collective variable space using boxed molecular dynamics. Faraday Discussions, 195. pp. 395-419. ISSN 1359-6640

Gruszka, DT, Mendonça, CATF, Paci, E orcid.org/0000-0002-4891-2768 et al. (4 more authors) (2016) Disorder drives cooperative folding in a multidomain protein. Proceedings of the National Academy of Sciences of the United States of America, 113 (42). pp. 11841-11846. ISSN 0027-8424

Papachristos, K, Muench, SP orcid.org/0000-0001-6869-4414 and Paci, E orcid.org/0000-0002-4891-2768 (2016) Characterization of the flexibility of the peripheral stalk of prokaryotic rotary A-ATPases by atomistic simulations. Proteins, 84 (9). pp. 1203-1212. ISSN 0887-3585

Tych, KM, Batchelor, M orcid.org/0000-0001-6338-5698, Hoffmann, T et al. (5 more authors) (2016) Differential effects of hydrophobic core packing residues for thermodynamic and mechanical stability of a hyperthermophilic protein. Langmuir : the ACS journal of surfaces and colloids, 32 (29). pp. 7392-7402. ISSN 0743-7463

Tych, KM, Batchelor, M, Hoffmann, T et al. (4 more authors) (2016) Tuning protein mechanics through an ionic cluster graft from an extremophilic protein. Soft Matter, 12 (10). pp. 2688-2699. ISSN 1744-683X

Hickman, SJ, Ross, JF and Paci, E (2015) Prediction of stability changes upon mutation in an icosahedral capsid. Proteins: Structure, Function, and Bioinformatics, 83 (9). 1733 - 1741. ISSN 0887-3585

Gruszka, DT, Whelan, F, Farrance, OE et al. (9 more authors) (2015) Cooperative folding of intrinsically disordered domains drives assembly of a strong elongated protein. Nature Communications, 6. 7271. 7271 - ?.

Farrance, OE, Paci, E orcid.org/0000-0002-4891-2768, Radford, SE orcid.org/0000-0002-3079-8039 et al. (1 more author) (2015) Extraction of Accurate Biomolecular Parameters from Single-Molecule Force Spectroscopy Experiments. ACS Nano, 9 (2). pp. 1315-1324. ISSN 1936-0851

Batchelor, M, Wolny, M, Dougan, L et al. (3 more authors) (2015) Myosin tails and single α-helical domains. Biochemical Society Transactions, 43 (1). 58 - 63. ISSN 0300-5127

Richardson, RA, Papachristos, K, Read, DJ et al. (5 more authors) (2014) Understanding the apparent stator-rotor connections in the rotary ATPase family using coarse-grained computer modeling. Proteins: Structure, Function, and Bioinformatics, 82 (12). 3298 - 3311. ISSN 0887-3585

Wolny, M, Batchelor, M, Knight, PJ et al. (3 more authors) (2014) Stable single α-helices are constant force springs in proteins. Journal of Biological Chemistry, 289 (40). 27825 - 27835. ISSN 0021-9258

Radou, G, Dreyer, FN, Tuma, R et al. (1 more author) (2014) Functional dynamics of hexameric helicase probed by hydrogen exchange and simulation. Biophysical Journal, 107 (4). 983 - 990. ISSN 0006-3495

Krivov, SV, Fenton, H, Goldsmith, PJ et al. (3 more authors) (2014) Optimal reaction coordinate as a biomarker for the dynamics of recovery from kidney transplant. PLoS Computational Biology, 10 (6). e1003685. ISSN 1553-734X

Rimratchada, S, Paci, E, McLeish, TCB et al. (1 more author) (2014) The role of high-dimensional diffusive search, stabilization, and frustration in protein folding. Biophysical Journal, 106 (8). 1729 - 1740. ISSN 0006-3495

Song, CF, Papachristos, K, Rawson, S et al. (6 more authors) (2013) Flexibility within the Rotor and Stators of the Vacuolar H + -ATPase. PLoS ONE, 8 (12). e82207. ISSN 1932-6203

Radou, G, Enciso, M, Krivov, SV et al. (1 more author) (2013) Modulation of a protein free-energy landscape by circular permutation. Journal of Physical Chemistry B, 117 (44). 13743 - 13747. ISSN 1520-6106

Proceedings Paper

Tych, KM, Burnett, AD, Wood, CD et al. (7 more authors) (2013) Terahertz time-domain spectroscopy of lysozyme and mouse urinary protein single crystals. In: 2013 38th International Conference on Infrared, Millimeter, and Terahertz Waves (IRMMW-THz). 2013 38th International Conference on Infrared, Millimeter, and Terahertz Waves (IRMMW-THz), 01-06 Sep 2013, Mainz. IEEE .