Items where authors include "Agirre, Jon"

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Number of items: 30.

Article

Dialpuri, Jordan S, Bagdonas, Haroldas, Schofield, Lucy C et al. (6 more authors) (2024) Online carbohydrate 3D structure validation with the Privateer web app. Acta crystallographica. Section F, Structural biology communications. ISSN 2053-230X

Pérez-Jover, Isabel, Rochon, Kristy, Hu, Di et al. (10 more authors) (2024) Allosteric control of dynamin-related protein 1 through a disordered C-terminal Short Linear Motif. Nature Communications. 52. ISSN 2041-1723

Dialpuri, Jordan S, Bagdonas, Haroldas, Atanasova, Mihaela et al. (4 more authors) (2023) Analysis and validation of overall N-glycan conformation in Privateer. Acta crystallographica. Section D, Structural biology. 462–472. ISSN 2059-7983

Agirre, Jon orcid.org/0000-0002-1086-0253, Atanasova, Mihaela, Bagdonas, Haroldas et al. (91 more authors) (2023) The CCP4 suite : integrative software for macromolecular crystallography. Acta crystallographica. Section D, Structural biology. pp. 449-461. ISSN 2059-7983

Akkermans, Onno, Delloye-Bourgeois, Céline, Peregrina, Claudia et al. (21 more authors) (2022) GPC3-Unc5 receptor complex structure and role in cell migration. Cell. 3931-3949.e26. ISSN 1097-4172

Agirre, Jon orcid.org/0000-0002-1086-0253, Joosten, Robbie P and Roseman, Alan (2022) Model building and beyond. Acta crystallographica. Section D, Structural biology. pp. 1192-1193. ISSN 2059-7983

Krissinel, Eugene, Lebedev, Andrey A, Uski, Ville et al. (30 more authors) (2022) CCP4 Cloud for structure determination and project management in macromolecular crystallography. Acta crystallographica. Section D, Structural biology. pp. 1079-1089. ISSN 2059-7983

Joosten, Robbie P and Agirre, Jon orcid.org/0000-0002-1086-0253 (2022) Whole-proteome structures shed new light on posttranslational modifications. PLoS Biology. e3001673. ISSN 1544-9173

Atanasova, Mihaela, Nicholls, Robert A., Joosten, Robbie P. et al. (1 more author) (2022) Updated restraint dictionaries for carbohydrates in the pyranose form. Acta Crystallographica Section D: Structural Biology. pp. 455-465. ISSN 2059-7983

Qian, Pu, Gardiner, Alastair T, Šímová, Ivana et al. (24 more authors) (2022) 2.4-Å structure of the double-ring Gemmatimonas phototrophica photosystem. Science Advances. eabk3139. ISSN 2375-2548

Joosten, Robbie P., Nicholls, Robert A. and Agirre, Jon orcid.org/0000-0002-1086-0253 (2022) Towards consistency in geometry restraints for carbohydrates in the pyranose form : Modern dictionary generators reviewed. Current Medicinal Chemistry. pp. 1193-1207. ISSN 1875-533X

Rochira, William and Agirre, Jon orcid.org/0000-0002-1086-0253 (2020) Iris: Interactive all-in-one graphical validation of 3D protein model iterations. Protein Science. ISSN 1469-896X

Bagdonas, Haroldas, Ungar, Daniel orcid.org/0000-0002-9852-6160 and Agirre, Jon orcid.org/0000-0002-1086-0253 (2020) Leveraging glycomics data in glycoprotein 3D structure validation with Privateer. Beilstein Journal of Organic Chemistry. pp. 2523-2533. ISSN 1860-5397

Atanasova, Mihaela, Bagdonas, Haroldas and Agirre, Jon orcid.org/0000-0002-1086-0253 (2020) Structural glycobiology in the age of electron cryo-microscopy. CURRENT OPINION IN STRUCTURAL BIOLOGY. pp. 70-78. ISSN 0959-440X

Ji, Shiqi, Dix, Samuel R, Aziz, Adli A et al. (8 more authors) (2019) The molecular basis of endolytic activity of a multidomain alginate lyase from Defluviitalea phaphyphila, a representative of a new lyase family, PL39. The Journal of biological chemistry. pp. 18077-18091. ISSN 1083-351X

Agirre, Jon orcid.org/0000-0002-1086-0253, Moroz, Olga, Meier, Sebastian et al. (6 more authors) (2019) The structure of the AliC GH13 α-amylase from Alicyclobacillus sp. reveals the accommodation of starch branching points in the α-amylase family. Acta crystallographica. Section D, Structural biology. pp. 1-7. ISSN 2059-7983

Cowtan, Kevin orcid.org/0000-0002-0189-1437 and Agirre, Jon orcid.org/0000-0002-1086-0253 (2018) Macromolecular refinement by model morphing using non-atomic parameterizations. Acta crystallographica. Section D, Structural biology. ISSN 2059-7983

Potterton, Liz, Agirre, Jon orcid.org/0000-0002-1086-0253, Ballard, Charles C. et al. (22 more authors) (2018) CCP4i2 : The new graphical user interface to the CCP4 program suite. Acta crystallographica. Section D, Structural biology. pp. 68-84. ISSN 2059-7983

McNicholas, Stuart, Croll, Tristan, Burnley, Tom et al. (6 more authors) (2017) Automating tasks in protein structure determination with the Clipper Python module. Protein science : a publication of the Protein Society. pp. 1-24. ISSN 1469-896X

Agirre, Jon orcid.org/0000-0002-1086-0253 and Dodson, Eleanor (2017) Forty years of collaborative computational crystallography. Protein science : a publication of the Protein Society. pp. 1-11. ISSN 1469-896X

McNicholas, Stuart and Agirre, Jon orcid.org/0000-0002-1086-0253 (2017) Glycoblocks : a schematic three-dimensional representation for glycans and their interactions. Acta crystallographica. Section D, Structural biology. pp. 187-194. ISSN 2059-7983

Agirre, Jon orcid.org/0000-0002-1086-0253 (2017) Strategies for carbohydrate model building, refinement and validation. Acta crystallographica. Section D, Structural biology. pp. 171-186. ISSN 2059-7983

Agirre, Jon orcid.org/0000-0002-1086-0253, Davies, Gideon J. orcid.org/0000-0002-7343-776X, Wilson, Keith S. orcid.org/0000-0002-3581-2194 et al. (1 more author) (2017) Carbohydrate structure: : the rocky road to automation. CURRENT OPINION IN STRUCTURAL BIOLOGY. pp. 39-47. ISSN 0959-440X

Cifuente, Javier O, Comino, Natalia, Madariaga-Marcos, Julene et al. (5 more authors) (2016) Structural Basis of Glycogen Biosynthesis Regulation in Bacteria. Structure. pp. 1613-1622. ISSN 1878-4186

Nnamchi, Chukwudi I, Parkin, Gary, Efimov, Igor et al. (9 more authors) (2016) Structural and spectroscopic characterisation of a heme peroxidase from sorghum. Journal of Biological Inorganic Chemistry. pp. 1-8. ISSN 0949-8257

Agirre, Jon orcid.org/0000-0002-1086-0253, Ariza, Antonio, Offen, Wendy A. orcid.org/0000-0002-2758-4531 et al. (9 more authors) (2016) Three-dimensional structures of two heavily N-glycosylated Aspergillus sp. family GH3 β-D-glucosidases. Acta crystallographica. Section D, Structural biology. pp. 254-265. ISSN 2059-7983

Hudson, Kieran L, Bartlett, Gail J, Diehl, Roger C et al. (4 more authors) (2015) Carbohydrate-Aromatic Interactions in Proteins. Journal of the American Chemical Society. pp. 15152-15160. ISSN 1520-5126

Agirre, Jon orcid.org/0000-0002-1086-0253, Iglesias-Fernández, Javier, Rovira, Carme et al. (3 more authors) (2015) Privateer : software for the conformational validation of carbohydrate structures. Nature Structural & Molecular Biology. pp. 833-834. ISSN 1545-9993

Agirre, Jon orcid.org/0000-0002-1086-0253, Davies, Gideon orcid.org/0000-0002-7343-776X, Wilson, Keith orcid.org/0000-0002-3581-2194 et al. (1 more author) (2015) Carbohydrate anomalies in the PDB. NATURE CHEMICAL BIOLOGY. p. 303. ISSN 1552-4450

Other

Agirre, Jon orcid.org/0000-0002-1086-0253 and Cowtan, Kevin Douglas orcid.org/0000-0002-0189-1437 (2015) Validation of carbohydrate structures in CCP4 6.5. UNSPECIFIED.

This list was generated on Sat Mar 23 03:38:10 2024 GMT.